[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 9,485 items for (author: yu & x)

EMDB-37997:
Cryo-EM structure of human alpha-fetoprotein
Method: single particle / : Liu ZM, Li MS, Wu C, Liu K

PDB-8x1n:
Cryo-EM structure of human alpha-fetoprotein
Method: single particle / : Liu ZM, Li MS, Wu C, Liu K

EMDB-36366:
Cryo-EM structure of Symbiodinium photosystem I
Method: single particle / : Zhao LS, Wang N, Li K, Zhang YZ, Liu LN

PDB-8jjr:
Cryo-EM structure of Symbiodinium photosystem I
Method: single particle / : Zhao LS, Wang N, Li K, Zhang YZ, Liu LN

EMDB-36776:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36777:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron DR1 at symmetric pre-cleavage state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36778:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36786:
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0p:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0q:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0r:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k15:
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-28941:
HIV Env BG505_MD39_B11 SOSIP boosting trimer in complex with B11_d77.7 mouse Fab and RM20A3 Fab
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-28942:
HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized BG18HCgl knock-in mice
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-28945:
HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized wild type mice, and NHP monoclonal Fab RM20A3
Method: single particle / : Ozorowski G, Ward AB

EMDB-43190:
HIV Env BG505_MD39_B16 SOSIP boosting trimer in complex with B16_d77.5 mouse Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-34718:
Cryo-EM structure of human norepinephrine transporter NET in an inward-open state at resolution of 2.5 angstrom
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-34719:
Cryo-EM structure of human norepinephrine transporter NET in the presence of norepinephrine in an inward-open state at resolution of 2.9 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-34720:
Cryo-EM structure of human norepinephrine transporter NET in the presence of dopamine in an inward-open state at resolution of 3.0 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-34721:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant desipramine in an inward-open state at resolution of 2.5 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-34722:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant bupropion in an inward-open state at resolution of 3.0 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8hfe:
Cryo-EM structure of human norepinephrine transporter NET in an inward-open state at resolution of 2.5 angstrom
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8hff:
Cryo-EM structure of human norepinephrine transporter NET in the presence of norepinephrine in an inward-open state at resolution of 2.9 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8hfg:
Cryo-EM structure of human norepinephrine transporter NET in the presence of dopamine in an inward-open state at resolution of 3.0 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8hfi:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant desipramine in an inward-open state at resolution of 2.5 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8hfl:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant bupropion in an inward-open state at resolution of 3.0 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-43869:
HIV-1 capsid-SP1 subtomogram averaging obtained from EMPIAR-10164 using TomoNet and Relion4 (4 tilt-series)
Method: subtomogram averaging / : Wang H, Zhou ZH

EMDB-36659:
Structure of human TRPV4 with antagonist A1
Method: single particle / : Fan J, Lei X

EMDB-36660:
Structure of human TRPV4 with antagonist GSK279
Method: single particle / : Fan J, Lei X

EMDB-36675:
Structure of human TRPV4 with antagonist A2
Method: single particle / : Fan J, Lei X

EMDB-36676:
Structure of human TRPV4 with antagonist A2 and RhoA
Method: single particle / : Fan J, Lei X

PDB-8ju5:
Structure of human TRPV4 with antagonist A1
Method: single particle / : Fan J, Lei X

PDB-8ju6:
Structure of human TRPV4 with antagonist GSK279
Method: single particle / : Fan J, Lei X

PDB-8jvi:
Structure of human TRPV4 with antagonist A2
Method: single particle / : Fan J, Lei X

PDB-8jvj:
Structure of human TRPV4 with antagonist A2 and RhoA
Method: single particle / : Fan J, Lei X

EMDB-36147:
Extracellular domain of gamma delta TCR
Method: single particle / : Xin W, Chi X, Huang B, Su Q, Zhou Q

EMDB-36149:
V gamma9 V delta2 TCR and CD3 complex in LMNG
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36152:
Vgamma5 Vdelta1 TCR complex (MPDI/TMDI)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36153:
Vgamma5 Vdelta1 TCR complex (MPDII/TMDII)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36155:
Vgamma5 Vdelta1 TCR complex (MPD/TMD)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36156:
Vgamma5 Vdelta1 T cell receptor complex
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-37904:
Vgamma5Vdelta1 EH TCR-CD3 complex
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-37914:
T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-37929:
T cell receptor delta 2 gamma 9 with TCRD TM domain chimera of TRAC
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39128:
T cell receptor V delta2 V gamma9 in GDN
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39359:
T cell receptor V delta2 V gamma9 in GDN (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Su Q, Zhou Q

EMDB-39361:
Vgamma5 Vdelta1 TCR complex (MPDI/TMDI, DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39362:
Vgamma5 Vdelta1 TCR complex (MPDII/TMDII, DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39363:
V gamma9 V delta2 TCR and CD3 complex in LMNG (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39367:
Vgamma5 Vdelta1 TCR-CD3 complex (EH mutant, DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more